Sequence Similarity Clusters for the Entities in PDB 1BDJ

Entity #1 | Chains: A
CHEY protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 1598
95 % 62 74 309 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 63 75 320
70 % 63 75 365
50 % 71 84 392
40 % 79 93 364
30 % 193 256 114
Entity #2 | Chains: B
AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 23373
95 % 3 4 20026 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 4 19486
70 % 3 4 17925
50 % 3 4 15574
40 % 3 4 13873
30 % 3 4 11875

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.