Sequence Similarity Clusters for the Entities in PDB 1BDJ

Entity #1 | Chains: A
CHEY protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 1643
95 % 62 74 316 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 63 75 331
70 % 63 75 376
50 % 71 84 411
40 % 80 95 385
30 % 195 261 115
Entity #2 | Chains: B
AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 23922
95 % 3 4 20447 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 4 19880
70 % 3 4 18297
50 % 3 4 15875
40 % 3 4 14130
30 % 3 4 12091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures