Sequence Similarity Clusters for the Entities in PDB 1BDJ

Entity #1 | Chains: A
CHEY protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 1661
95 % 62 74 321 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 63 75 336
70 % 63 75 378
50 % 71 84 420
40 % 80 95 399
30 % 195 261 117
Entity #2 | Chains: B
AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24258
95 % 3 4 20714 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 4 20131
70 % 3 4 18517
50 % 3 4 16057
40 % 3 4 14285
30 % 3 4 12220

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures