Sequence Similarity Clusters for the Entities in PDB 1BDF

Entity #1 | Chains: A,B,C,D
RNA POLYMERASE ALPHA SUBUNIT protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23273
95 % 1 24 616 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.9
PDBFlex
90 % 1 24 641
70 % 1 24 692
50 % 1 24 745
40 % 1 24 778
30 % 1 24 780

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures