Sequence Similarity Clusters for the Entities in PDB 1BDA

Entity #1 | Chains: A,B
SINGLE CHAIN TISSUE TYPE PLASMINOGEN ACTIVATOR protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15152
95 % 4 4 12143 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 4 11972
70 % 5 5 9802
50 % 5 5 8896
40 % 128 128 388
30 % 1836 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures