Sequence Similarity Clusters for the Entities in PDB 1BD2

Entity #1 | Chains: A
HLA-A 0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 158 197 52
95 % 202 246 58 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 240 287 36
70 % 547 681 6
50 % 549 686 6
40 % 586 736 10
30 % 638 853 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 482 590 2
95 % 516 633 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 522 642 4
70 % 670 872 4
50 % 682 894 4
40 % 682 894 8
30 % 682 894 14
Entity #3 | Chains: C
TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T CELL RECEPTOR ALPHA protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59676
95 % 1 1 41650
90 % 2 3 21781
70 % 144 256 72
50 % 155 287 83
40 % 155 287 102
30 % 3238 5342 1
Entity #5 | Chains: E
T CELL RECEPTOR BETA protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57002
95 % 18 29 1678
90 % 48 76 309
70 % 163 297 46
50 % 163 300 77
40 % 163 300 95
30 % 3239 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.