Sequence Similarity Clusters for the Entities in PDB 1BD2

Entity #1 | Chains: A
HLA-A 0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 204 52
95 % 208 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 249 302 35
70 % 569 716 6
50 % 571 721 6
40 % 609 772 10
30 % 667 896 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 497 616 2
95 % 532 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 538 669 4
70 % 696 912 4
50 % 708 934 3
40 % 708 934 7
30 % 708 934 12
Entity #3 | Chains: C
TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T CELL RECEPTOR ALPHA protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61427
95 % 1 1 42899
90 % 2 3 22489
70 % 150 272 51
50 % 161 303 79
40 % 161 303 96
30 % 3363 5571 1
Entity #5 | Chains: E
T CELL RECEPTOR BETA protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58645
95 % 18 29 1730 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 48 76 329
70 % 169 312 29
50 % 169 315 72
40 % 169 315 92
30 % 3364 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.