Sequence Similarity Clusters for the Entities in PDB 1BD2

Entity #1 | Chains: A
HLA-A 0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 204 53
95 % 209 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 252 309 36
70 % 580 732 6
50 % 582 737 7
40 % 620 788 10
30 % 682 919 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 507 632 2
95 % 542 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 548 685 4
70 % 711 936 4
50 % 723 958 3
40 % 723 958 7
30 % 723 958 12
Entity #3 | Chains: C
TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T CELL RECEPTOR ALPHA protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63393
95 % 1 1 44197
90 % 3 4 18763
70 % 162 286 56
50 % 189 334 76
40 % 189 334 98
30 % 3631 5941 1
Entity #5 | Chains: E
T CELL RECEPTOR BETA protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60509
95 % 18 29 1822 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 48 76 342
70 % 197 343 25
50 % 197 346 67
40 % 197 346 89
30 % 3632 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures