Sequence Similarity Clusters for the Entities in PDB 1BD2

Entity #1 | Chains: A
HLA-A 0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 212 58
95 % 209 257 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 252 311 36
70 % 592 746 6
50 % 602 760 7
40 % 634 812 9
30 % 700 939 13
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 543 675 2
95 % 554 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 560 699 4
70 % 726 953 4
50 % 738 975 3
40 % 738 975 6
30 % 738 975 9
Entity #3 | Chains: C
TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T CELL RECEPTOR ALPHA protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51842
95 % 1 1 42776
90 % 3 4 17132
70 % 192 340 28
50 % 192 341 77
40 % 192 341 99
30 % 4478 7269 1
Entity #5 | Chains: E
T CELL RECEPTOR BETA protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57237
95 % 18 29 1872 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 48 76 347
70 % 200 350 25
50 % 200 353 68
40 % 200 353 88
30 % 4479 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures