Sequence Similarity Clusters for the Entities in PDB 1BCP

Entity #1 | Chains: A,G
PERTUSSIS TOXIN protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 11960
95 % 2 3 11557
90 % 2 3 11398
70 % 2 3 10769
50 % 2 3 9684
40 % 2 3 8778
30 % 2 3 7660
Entity #2 | Chains: B,H
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12352
95 % 2 4 11856
90 % 2 4 11666
70 % 3 7 5400
50 % 3 7 5104
40 % 3 7 4806
30 % 3 7 4340
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12353
95 % 2 3 11857
90 % 2 3 11667
70 % 4 7 5400
50 % 4 7 5104
40 % 4 7 4806
30 % 4 7 4340
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 5107
95 % 2 3 5736
90 % 2 3 5733
70 % 2 3 5609
50 % 2 3 5280
40 % 2 3 4967
30 % 2 3 4463
Entity #5 | Chains: F,L
PERTUSSIS TOXIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13218
95 % 2 3 12565
90 % 2 3 12361
70 % 2 3 11618
50 % 2 3 10411
40 % 2 3 9434
30 % 2 3 8222

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.