Sequence Similarity Clusters for the Entities in PDB 1BCP

Entity #1 | Chains: A,G
PERTUSSIS TOXIN protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12871
95 % 2 3 12409 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 12237
70 % 2 3 11558
50 % 2 3 10339
40 % 2 3 9373
30 % 2 3 8183
Entity #2 | Chains: B,H
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 13285
95 % 2 4 12729 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 4 12523
70 % 3 7 5817
50 % 3 7 5467
40 % 3 7 5138
30 % 3 7 4631
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13286
95 % 2 3 12730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 12524
70 % 4 7 5817
50 % 4 7 5467
40 % 4 7 5138
30 % 4 7 4631
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5537
95 % 2 3 6184 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 3 6182
70 % 2 3 6028
50 % 2 3 5650
40 % 2 3 5306
30 % 2 3 4759
Entity #5 | Chains: F,L
PERTUSSIS TOXIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14202
95 % 2 3 13463 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 3 13244
70 % 2 3 12461
50 % 2 3 11115
40 % 2 3 10073
30 % 2 3 8783

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures