Sequence Similarity Clusters for the Entities in PDB 1BCP

Entity #1 | Chains: A,G
PERTUSSIS TOXIN protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12565
95 % 2 3 12143 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 11981
70 % 2 3 11326
50 % 2 3 10125
40 % 2 3 9187
30 % 2 3 8016
Entity #2 | Chains: B,H
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12973
95 % 2 4 12454 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 4 12253
70 % 3 7 5690
50 % 3 7 5352
40 % 3 7 5028
30 % 3 7 4538
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12974
95 % 2 3 12455 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 12254
70 % 4 7 5690
50 % 4 7 5352
40 % 4 7 5028
30 % 4 7 4538
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5390
95 % 2 3 6041 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 3 6035
70 % 2 3 5899
50 % 2 3 5533
40 % 2 3 5195
30 % 2 3 4665
Entity #5 | Chains: F,L
PERTUSSIS TOXIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13865
95 % 2 3 13175 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 3 12960
70 % 2 3 12207
50 % 2 3 10886
40 % 2 3 9876
30 % 2 3 8604

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.