Sequence Similarity Clusters for the Entities in PDB 1BCP

Entity #1 | Chains: A,G
PERTUSSIS TOXIN protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 11693
95 % 2 3 11303
90 % 2 3 11151
70 % 2 3 10530
50 % 2 3 9470
40 % 2 3 8589
30 % 2 3 7503
Entity #2 | Chains: B,H
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12072
95 % 2 4 11590
90 % 2 4 11411
70 % 3 7 5276
50 % 3 7 4989
40 % 3 7 4708
30 % 3 7 4258
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12073
95 % 2 3 11591
90 % 2 3 11412
70 % 4 7 5276
50 % 4 7 4989
40 % 4 7 4708
30 % 4 7 4258
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 4971
95 % 2 3 5582
90 % 2 3 5586
70 % 2 3 5475
50 % 2 3 5160
40 % 2 3 4864
30 % 2 3 4376
Entity #5 | Chains: F,L
PERTUSSIS TOXIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12926
95 % 2 3 12294
90 % 2 3 12097
70 % 2 3 11366
50 % 2 3 10189
40 % 2 3 9234
30 % 2 3 8053

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.