Sequence Similarity Clusters for the Entities in PDB 1BCC

Entity #1 | Chains: A
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24709
95 % 1 3 20965 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 20385
70 % 31 47 658
50 % 31 47 706
40 % 31 47 739
30 % 39 55 630
Entity #10 | Chains: J
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29018
95 % 20 32 1103 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.6
PDBFlex
90 % 20 32 1125
70 % 31 46 680
50 % 31 46 723
40 % 31 46 753
30 % 31 46 748
Entity #2 | Chains: B
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51280
95 % 1 3 21034 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 21 34 1103
70 % 32 48 659
50 % 32 48 707
40 % 32 48 740
30 % 32 48 735
Entity #3 | Chains: C
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 17 1286
95 % 12 17 1727 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 17 1759
70 % 31 46 660
50 % 39 54 604
40 % 46 62 457
30 % 46 62 457
Entity #4 | Chains: D
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26396
95 % 19 29 1251 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 19 29 1278
70 % 30 43 740
50 % 38 51 652
40 % 38 51 681
30 % 45 59 475
Entity #5 | Chains: E
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27162
95 % 1 3 22595 Flexibility: Medium
Max RMSD: 7.6, Avg RMSD: 5.1
PDBFlex
90 % 19 27 1498
70 % 30 41 829
50 % 38 49 700
40 % 45 57 495
30 % 45 57 497
Entity #6 | Chains: F
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28479
95 % 1 3 23599 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 20 32 1122
70 % 31 46 676
50 % 31 46 720
40 % 31 46 751
30 % 31 46 746
Entity #7 | Chains: G
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28834
95 % 1 3 23892 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 20 32 1124
70 % 20 32 1156
50 % 31 46 721
40 % 31 46 752
30 % 31 46 747
Entity #8 | Chains: H
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28865
95 % 18 24 1761 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 29 38 866
70 % 30 42 787
50 % 30 42 832
40 % 30 42 863
30 % 30 42 848
Entity #9 | Chains: I
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.