Sequence Similarity Clusters for the Entities in PDB 1BCC

Entity #1 | Chains: A
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27971
95 % 1 3 24509 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 23690
70 % 32 54 592
50 % 32 54 635
40 % 32 54 674
30 % 40 62 600
Entity #10 | Chains: J
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 34 875
95 % 21 36 1003 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 21 36 1036
70 % 21 39 975
50 % 21 39 1013
40 % 21 39 1035
30 % 21 39 1018
Entity #2 | Chains: B
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25866
95 % 1 3 22801 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 22 38 1034
70 % 33 55 590
50 % 33 55 633
40 % 33 55 672
30 % 33 55 672
Entity #3 | Chains: C
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 17 1609
95 % 12 17 1894 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 17 1933
70 % 32 53 593
50 % 40 61 559
40 % 47 69 454
30 % 47 69 463
Entity #4 | Chains: D
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25862
95 % 19 29 1378 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 19 32 1215
70 % 30 46 712
50 % 38 54 643
40 % 44 61 513
30 % 44 61 509
Entity #5 | Chains: E
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25863
95 % 1 3 22798 Flexibility: Medium
Max RMSD: 7.6, Avg RMSD: 5.1
PDBFlex
90 % 20 31 1311
70 % 31 45 763
50 % 39 53 692
40 % 46 61 520
30 % 46 61 518
Entity #6 | Chains: F
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25864
95 % 1 3 22799 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 21 36 1038
70 % 32 53 588
50 % 32 53 631
40 % 32 53 671
30 % 32 53 671
Entity #7 | Chains: G
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25865
95 % 1 3 22800 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 21 36 1033
70 % 21 39 972
50 % 32 53 626
40 % 32 53 667
30 % 32 53 668
Entity #8 | Chains: H
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 24 1625
95 % 18 30 1294 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 29 44 718
70 % 31 52 596
50 % 31 52 639
40 % 31 52 677
30 % 31 52 680
Entity #9 | Chains: I
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures