Sequence Similarity Clusters for the Entities in PDB 1BCC

Entity #1 | Chains: A
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25932
95 % 1 3 21979 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 21348
70 % 31 50 644
50 % 31 50 691
40 % 31 50 723
30 % 39 58 607
Entity #10 | Chains: J
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30406
95 % 20 32 1154 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 20 32 1178
70 % 31 49 661
50 % 31 49 706
40 % 31 49 735
30 % 31 49 732
Entity #2 | Chains: B
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53485
95 % 1 3 22047 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 21 34 1157
70 % 32 51 645
50 % 32 51 692
40 % 32 51 724
30 % 32 51 720
Entity #3 | Chains: C
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 17 1356
95 % 12 17 1806 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 17 1845
70 % 31 49 647
50 % 39 57 584
40 % 46 65 454
30 % 46 65 453
Entity #4 | Chains: D
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27672
95 % 19 29 1303 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 19 32 1140
70 % 30 46 698
50 % 38 54 622
40 % 38 54 659
30 % 45 62 470
Entity #5 | Chains: E
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28471
95 % 1 3 23672 Flexibility: Medium
Max RMSD: 7.5, Avg RMSD: 7.5
PDBFlex
90 % 19 30 1296
70 % 30 44 761
50 % 38 52 673
40 % 45 60 497
30 % 45 60 496
Entity #6 | Chains: F
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29841
95 % 1 3 24722 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 20 32 1174
70 % 31 49 659
50 % 31 49 702
40 % 31 49 731
30 % 31 49 729
Entity #7 | Chains: G
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30217
95 % 1 3 25029 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 20 32 1177
70 % 20 35 1076
50 % 31 49 705
40 % 31 49 734
30 % 31 49 731
Entity #8 | Chains: H
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30248
95 % 18 30 1230
90 % 29 44 710
70 % 30 48 669
50 % 30 48 714
40 % 30 48 743
30 % 30 48 741
Entity #9 | Chains: I
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures