Sequence Similarity Clusters for the Entities in PDB 1BCC

Entity #1 | Chains: A
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25519
95 % 1 3 21658 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 21051
70 % 31 50 635
50 % 31 50 681
40 % 31 50 710
30 % 39 58 601
Entity #10 | Chains: J
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29958
95 % 20 32 1132 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 20 32 1158
70 % 31 49 651
50 % 31 49 697
40 % 31 49 722
30 % 31 49 720
Entity #2 | Chains: B
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52731
95 % 1 3 21724 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 21 34 1140
70 % 32 51 636
50 % 32 51 682
40 % 32 51 711
30 % 32 51 708
Entity #3 | Chains: C
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 17 1333
95 % 12 17 1778 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 17 1814
70 % 31 49 638
50 % 39 57 574
40 % 46 65 449
30 % 46 65 449
Entity #4 | Chains: D
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27253
95 % 19 29 1283 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 19 32 1122
70 % 30 46 688
50 % 38 54 614
40 % 38 54 647
30 % 45 62 468
Entity #5 | Chains: E
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28043
95 % 1 3 23322 Flexibility: Medium
Max RMSD: 7.5, Avg RMSD: 7.5
PDBFlex
90 % 19 30 1278
70 % 30 44 757
50 % 38 52 666
40 % 45 60 489
30 % 45 60 488
Entity #6 | Chains: F
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29399
95 % 1 3 24361 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 20 32 1155
70 % 31 49 649
50 % 31 49 692
40 % 31 49 718
30 % 31 49 717
Entity #7 | Chains: G
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29769
95 % 1 3 24665 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 20 32 1157
70 % 20 35 1066
50 % 31 49 696
40 % 31 49 721
30 % 31 49 719
Entity #8 | Chains: H
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 29800
95 % 18 30 1209
90 % 29 44 694
70 % 30 48 659
50 % 30 48 705
40 % 30 48 732
30 % 30 48 730
Entity #9 | Chains: I
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.