Sequence Similarity Clusters for the Entities in PDB 1BCC

Entity #1 | Chains: A
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26499
95 % 1 3 22424 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 21765
70 % 32 54 582
50 % 32 54 618
40 % 32 54 656
30 % 40 62 579
Entity #10 | Chains: J
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 31003
95 % 21 36 1001 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 21 36 1037
70 % 32 53 592
50 % 32 53 631
40 % 32 53 665
30 % 32 53 655
Entity #2 | Chains: B
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54486
95 % 1 3 22493 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 22 38 1023
70 % 33 55 583
50 % 33 55 620
40 % 33 55 657
30 % 33 55 643
Entity #3 | Chains: C
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 17 1397
95 % 12 17 1873 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 17 1915
70 % 32 53 585
50 % 40 61 544
40 % 47 69 442
30 % 47 69 443
Entity #4 | Chains: D
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28244
95 % 19 29 1326 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 19 32 1171
70 % 30 46 711
50 % 38 54 636
40 % 38 54 670
30 % 45 62 479
Entity #5 | Chains: E
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29049
95 % 1 3 24127 Flexibility: Medium
Max RMSD: 7.5, Avg RMSD: 7.5
PDBFlex
90 % 20 31 1284
70 % 31 45 756
50 % 39 53 691
40 % 46 61 504
30 % 46 61 496
Entity #6 | Chains: F
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30438
95 % 1 3 25188 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 21 36 1035
70 % 32 53 590
50 % 32 53 628
40 % 32 53 662
30 % 32 53 651
Entity #7 | Chains: G
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30818
95 % 1 3 25496 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 21 36 1036
70 % 21 39 965
50 % 32 53 630
40 % 32 53 664
30 % 32 53 654
Entity #8 | Chains: H
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30849
95 % 18 30 1262
90 % 29 44 715
70 % 31 52 597
50 % 31 52 639
40 % 31 52 672
30 % 31 52 662
Entity #9 | Chains: I
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures