Sequence Similarity Clusters for the Entities in PDB 1BC8

Entity #1 | Chains: A
DNA (5'-D(*TP*AP*CP*CP*GP*GP*AP*AP*GP*T)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(*AP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
PROTEIN (SAP-1 ETS DOMAIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30394
95 % 1 3 26563 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 3 25616
70 % 1 4 14990
50 % 6 18 2059
40 % 6 18 2042
30 % 6 18 1946

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures