Sequence Similarity Clusters for the Entities in PDB 1BC8

Entity #1 | Chains: A
DNA (5'-D(*TP*AP*CP*CP*GP*GP*AP*AP*GP*T)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(*AP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
PROTEIN (SAP-1 ETS DOMAIN) protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28726
95 % 1 3 23806 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 3 23049
70 % 1 4 13371
50 % 6 11 2761
40 % 6 11 2721
30 % 6 11 2544

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.