Sequence Similarity Clusters for the Entities in PDB 1BBX

Entity #1 | Chains: A,B
DNA (5'-D(*CP*TP*AP*GP*CP*GP*CP*GP*CP*TP*AP*G)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,D
DNA-BINDING PROTEIN 7D protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 16807
95 % 7 8 8477
90 % 7 8 8403
70 % 24 26 2159
50 % 24 26 2161
40 % 24 26 2153
30 % 24 26 2033

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures