Sequence Similarity Clusters for the Entities in PDB 1BBX

Entity #1 | Chains: A,B
DNA (5'-D(*CP*TP*AP*GP*CP*GP*CP*GP*CP*TP*AP*G)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,D
DNA-BINDING PROTEIN 7D protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24828
95 % 7 8 8199
90 % 7 8 8147
70 % 24 26 2093
50 % 24 26 2101
40 % 24 26 2102
30 % 24 26 2022

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures