Sequence Similarity Clusters for the Entities in PDB 1BBT

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40414
95 % 2 3 22872
90 % 2 3 22135
70 % 5 20 3121
50 % 5 22 2749
40 % 5 22 2704
30 % 5 22 2538
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27303
95 % 3 12 5698
90 % 3 12 5706
70 % 5 22 2785
50 % 5 22 2750
40 % 5 22 2705
30 % 12 192 165
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27223
95 % 3 12 5690
90 % 3 12 5696
70 % 5 22 2289
50 % 5 24 2090
40 % 5 36 310
30 % 13 205 146
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 47201
95 % 5 18 3580
90 % 5 18 3630
70 % 5 18 3575
50 % 5 18 3485
40 % 5 18 3366
30 % 5 25 662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.