Sequence Similarity Clusters for the Entities in PDB 1BBT

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38909
95 % 2 3 21938
90 % 2 3 21248
70 % 4 13 4763
50 % 4 15 3999
40 % 4 15 3827
30 % 4 15 3527
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26198
95 % 2 5 13631
90 % 2 5 13398
70 % 4 15 4128
50 % 4 15 4000
40 % 4 15 3828
30 % 11 178 170
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26120
95 % 2 5 13615
90 % 2 5 13383
70 % 4 13 4758
50 % 4 15 3996
40 % 4 27 330
30 % 12 189 152
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45495
95 % 4 13 4909
90 % 4 13 4926
70 % 4 13 4858
50 % 4 13 4671
40 % 4 13 4434
30 % 4 20 679

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.