Sequence Similarity Clusters for the Entities in PDB 1BBT

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36909
95 % 2 3 20830
90 % 2 3 20172
70 % 4 13 4504
50 % 4 15 3799
40 % 4 15 3634
30 % 4 15 3359
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24845
95 % 2 5 12954
90 % 2 5 12732
70 % 4 15 3904
50 % 4 15 3800
40 % 4 15 3635
30 % 11 174 160
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24774
95 % 2 5 12939
90 % 2 5 12718
70 % 4 13 4500
50 % 4 15 3796
40 % 4 27 302
30 % 12 183 146
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43218
95 % 4 13 4632
90 % 4 13 4656
70 % 4 13 4608
50 % 4 13 4438
40 % 4 13 4227
30 % 4 20 644

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.