Sequence Similarity Clusters for the Entities in PDB 1BBT

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36287
95 % 2 3 20510
90 % 2 3 19866
70 % 4 13 4432
50 % 4 15 3737
40 % 4 15 3574
30 % 4 15 3307
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24423
95 % 2 5 12741
90 % 2 5 12520
70 % 4 15 3838
50 % 4 15 3738
40 % 4 15 3575
30 % 11 173 159
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24352
95 % 2 5 12726
90 % 2 5 12506
70 % 4 13 4428
50 % 4 15 3734
40 % 4 27 295
30 % 12 181 146
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42523
95 % 4 13 4550
90 % 4 13 4572
70 % 4 13 4529
50 % 4 13 4364
40 % 4 13 4153
30 % 4 20 628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.