Sequence Similarity Clusters for the Entities in PDB 1BBT

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 34676
95 % 2 3 19645
90 % 2 3 19032
70 % 4 13 4244
50 % 4 15 3566
40 % 4 15 3419
30 % 4 15 3165
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 23313
95 % 2 5 12129
90 % 2 5 11920
70 % 4 15 3678
50 % 4 15 3567
40 % 4 15 3420
30 % 11 169 154
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 23243
95 % 2 5 12115
90 % 2 5 11907
70 % 4 13 4241
50 % 4 15 3563
40 % 4 25 279
30 % 12 176 141
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40717
95 % 4 13 4337
90 % 4 13 4370
70 % 4 13 4333
50 % 4 13 4171
40 % 4 13 3972
30 % 4 20 575

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.