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METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS
Sequence Clustering and Redundancy Reduction Results
1BBT
Sequence Clusters for the Sequence Entities in PDB 1BBT
Entity #1: Chains: 1 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31423
95% 2 3 17877
90% 2 3 17357
70% 4 10 5257
50% 4 11 4540
40% 4 11 4262
30% 4 11 3864
Entity #2: Chains: 2 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21132
95% 2 3 17790
90% 2 3 17301
70% 4 11 4755
50% 4 11 4541
40% 4 11 4263
30% 10 155 140
Entity #3: Chains: 3 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21066
95% 2 3 17751
90% 2 3 17273
70% 4 10 5244
50% 4 11 4537
40% 4 21 268
30% 10 158 129
Entity #4: Chains: 4 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 37011
95% 4 9 6147
90% 4 9 6131
70% 4 9 5972
50% 4 9 5571
40% 4 9 5200
30% 4 16 536
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.