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METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS
Sequence Clustering and Redundancy Reduction Results
1BBT
Sequence Clusters for the Sequence Entities in PDB 1BBT
Entity #1: Chains: 1 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32362
95% 2 3 18334
90% 2 3 17798
70% 4 10 5412
50% 4 11 4654
40% 4 11 4363
30% 4 11 3952
Entity #2: Chains: 2 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21740
95% 2 3 18243
90% 2 3 17739
70% 4 11 4920
50% 4 11 4655
40% 4 11 4364
30% 10 157 145
Entity #3: Chains: 3 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21674
95% 2 3 18204
90% 2 3 17711
70% 4 10 5398
50% 4 11 4651
40% 4 21 273
30% 10 162 128
Entity #4: Chains: 4 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 38114
95% 4 9 6314
90% 4 9 6290
70% 4 9 6125
50% 4 9 5708
40% 4 9 5331
30% 4 16 552
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.