POP-OUT | CLOSE

An Information Portal to 108124 Biological Macromolecular Structures

METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS
Sequence Clustering and Redundancy Reduction Results
1BBT
Sequence Clusters for the Sequence Entities in PDB 1BBT
Entity #1: Chains: 1 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 213 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32036
95% 2 3 18171
90% 2 3 17637
70% 4 10 5368
50% 4 11 4614
40% 4 11 4331
30% 4 11 3921
Entity #2: Chains: 2 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21540
95% 2 3 18081
90% 2 3 17579
70% 4 11 4864
50% 4 11 4615
40% 4 11 4332
30% 10 157 143
Entity #3: Chains: 3 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21474
95% 2 3 18042
90% 2 3 17551
70% 4 10 5355
50% 4 11 4611
40% 4 21 273
30% 10 162 127
Entity #4: Chains: 4 - FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 37734
95% 4 9 6256
90% 4 9 6236
70% 4 9 6075
50% 4 9 5664
40% 4 9 5286
30% 4 16 545
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.