Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1447
95 % 3 17 1950 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.8
PDBFlex
90 % 3 17 1999
70 % 3 17 2010
50 % 14 42 834
40 % 14 42 865
30 % 14 42 850
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21917
95 % 2 4 18901 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 4 18403
70 % 4 8 8819
50 % 4 8 7973
40 % 4 8 7320
30 % 34 50 961
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23020
95 % 4 9 7778 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.6
PDBFlex
90 % 4 9 7734
70 % 4 9 7467
50 % 4 9 6881
40 % 35 52 960
30 % 35 52 935
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1146
95 % 3 22 1558 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 3 22 1585
70 % 264 405 44
50 % 264 405 78
40 % 1232 1681 4
30 % 1326 1830 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.