Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 1317
95 % 3 17 1806
90 % 3 17 1846
70 % 3 17 1861
50 % 14 41 765
40 % 14 41 797
30 % 14 41 799
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20668
95 % 2 4 17843
90 % 2 4 17386
70 % 4 8 8318
50 % 4 8 7548
40 % 4 8 6952
30 % 34 50 911
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21726
95 % 4 9 7301
90 % 4 9 7270
70 % 4 9 7039
50 % 4 9 6521
40 % 35 52 885
30 % 35 52 875
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1034
95 % 3 22 1455
90 % 3 22 1479
70 % 257 398 40
50 % 257 398 70
40 % 1164 1605 4
30 % 1258 1747 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.