Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1532
95 % 3 17 2063 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 3 17 2114
70 % 3 17 2127
50 % 14 42 868
40 % 14 42 901
30 % 14 42 886
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23175
95 % 2 4 19932 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 4 19393
70 % 4 8 9253
50 % 4 8 8367
40 % 4 8 7680
30 % 34 50 1018
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24312
95 % 4 9 8190
90 % 4 9 8134
70 % 4 9 7867
50 % 4 9 7242
40 % 35 52 1005
30 % 35 52 987
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1229
95 % 3 22 1649 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 22 1683
70 % 266 408 46
50 % 266 408 84
40 % 1259 1721 4
30 % 1353 1871 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures