Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1494
95 % 3 17 2002 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 3 17 2051
70 % 3 17 2057
50 % 14 42 854
40 % 14 42 885
30 % 14 42 871
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22608
95 % 2 4 19495 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 4 18984
70 % 4 8 9079
50 % 4 8 8206
40 % 4 8 7526
30 % 34 50 994
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23732
95 % 4 9 8020
90 % 4 9 7968
70 % 4 9 7713
50 % 4 9 7095
40 % 35 52 988
30 % 35 52 962
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1197
95 % 3 22 1608 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 22 1637
70 % 264 405 45
50 % 264 405 81
40 % 1241 1695 4
30 % 1335 1845 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.