Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 1385
95 % 3 17 1875
90 % 3 17 1924
70 % 3 17 1955
50 % 14 42 807
40 % 14 42 836
30 % 14 42 823
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21351
95 % 2 4 18426
90 % 2 4 17956
70 % 4 8 8588
50 % 4 8 7783
40 % 4 8 7145
30 % 34 50 940
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22430
95 % 4 9 7551
90 % 4 9 7509
70 % 4 9 7264
50 % 4 9 6709
40 % 35 52 937
30 % 35 52 914
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1100
95 % 3 22 1510
90 % 3 22 1534
70 % 258 399 44
50 % 258 399 78
40 % 1178 1621 4
30 % 1272 1763 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.