Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 1465
95 % 3 17 1975
90 % 3 17 2023
70 % 3 17 2032
50 % 14 42 842
40 % 14 42 875
30 % 14 42 859
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22310
95 % 2 4 19256
90 % 2 4 18745
70 % 4 8 8978
50 % 4 8 8116
40 % 4 8 7443
30 % 34 50 972
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23431
95 % 4 9 7906
90 % 4 9 7862
70 % 4 9 7613
50 % 4 9 7009
40 % 35 52 975
30 % 35 52 946
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1167
95 % 3 22 1583
90 % 3 22 1611
70 % 264 405 44
50 % 264 405 78
40 % 1234 1684 4
30 % 1328 1833 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.