Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1548
95 % 3 17 2088 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 3 17 2140
70 % 3 17 2148
50 % 14 42 876
40 % 14 42 908
30 % 14 42 895
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23514
95 % 2 4 20200 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 4 19644
70 % 4 8 9380
50 % 4 8 8481
40 % 4 8 7777
30 % 37 53 968
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24651
95 % 4 9 8313
90 % 4 9 8254
70 % 4 9 7977
50 % 4 9 7348
40 % 38 55 964
30 % 38 55 945
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1242
95 % 3 22 1670 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 22 1703
70 % 266 408 46
50 % 266 408 84
40 % 1351 1863 4
30 % 1360 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures