Sequence Similarity Clusters for the Entities in PDB 1BBR

Entity #1 | Chains: J,L,M
EPSILON-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1788
95 % 3 17 2095 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 3 17 2145
70 % 3 17 2158
50 % 14 42 892
40 % 14 42 914
30 % 14 42 900
Entity #2 | Chains: H
EPSILON-THROMBIN protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21245
95 % 2 4 19128 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 4 18612
70 % 4 8 8899
50 % 4 8 8114
40 % 4 8 7422
30 % 37 53 984
Entity #3 | Chains: E
EPSILON-THROMBIN protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21246
95 % 4 9 7940 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.7
PDBFlex
90 % 4 9 7876
70 % 4 9 7634
50 % 4 9 7010
40 % 38 55 958
30 % 38 55 952
Entity #4 | Chains: F,G,I
FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: K,N
EPSILON-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1454
95 % 3 22 1716 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 3 22 1752
70 % 266 409 47
50 % 266 409 85
40 % 1360 1885 4
30 % 1368 1899 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures