Sequence Similarity Clusters for the Entities in PDB 1BBJ

Entity #1 | Chains: A,L
IGG4-KAPPA B72.3 FAB (LIGHT CHAIN) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37162
95 % 1 1 31596
90 % 2 5 8115
70 % 1666 2519 1
50 % 3380 5107 1
40 % 3837 5756 1
30 % 4774 7175 1
Entity #2 | Chains: B,H
IGG4-KAPPA B72.3 FAB (HEAVY CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37159
95 % 1 1 31593 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 30267
70 % 1635 2478 2
50 % 3381 5107 1
40 % 3838 5756 1
30 % 4775 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures