Sequence Similarity Clusters for the Entities in PDB 1BBJ

Entity #1 | Chains: A,L
IGG4-KAPPA B72.3 FAB (LIGHT CHAIN) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41769
95 % 1 1 31762
90 % 2 5 7876
70 % 1588 2392 1
50 % 3218 4843 1
40 % 3218 4843 1
30 % 3769 5705 1
Entity #2 | Chains: B,H
IGG4-KAPPA B72.3 FAB (HEAVY CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41683
95 % 1 1 31714
90 % 1 1 30357
70 % 1552 2342 2
50 % 3219 4843 1
40 % 3219 4843 1
30 % 3770 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures