Sequence Similarity Clusters for the Entities in PDB 1BBD

Entity #1 | Chains: L
IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40252
95 % 7 13 3749 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 57 83 309
70 % 1379 2329 1
50 % 2808 4717 1
40 % 2808 4717 1
30 % 3241 5571 1
Entity #2 | Chains: H
IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40467
95 % 2 2 30931 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 21 30 1150
70 % 1357 2282 2
50 % 2809 4717 1
40 % 2809 4717 1
30 % 3242 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.