Sequence Similarity Clusters for the Entities in PDB 1BBD

Entity #1 | Chains: L
IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25256
95 % 7 13 4025 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 61 91 270
70 % 1514 2553 1
50 % 3089 5180 1
40 % 3516 5834 1
30 % 4328 7269 1
Entity #2 | Chains: H
IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34531
95 % 2 2 29616 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 21 30 1238
70 % 1492 2511 2
50 % 3090 5180 1
40 % 3517 5834 1
30 % 4329 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures