Sequence Similarity Clusters for the Entities in PDB 1BBD

Entity #1 | Chains: L
IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41131
95 % 7 13 3844 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 57 84 306
70 % 1447 2426 1
50 % 2945 4913 1
40 % 2945 4913 1
30 % 3388 5780 1
Entity #2 | Chains: H
IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41352
95 % 2 2 31554 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 21 30 1182
70 % 1422 2376 2
50 % 2946 4913 1
40 % 2946 4913 1
30 % 3389 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures