Sequence Similarity Clusters for the Entities in PDB 1BBD

Entity #1 | Chains: L
IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41629
95 % 7 13 3887 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 57 84 308
70 % 1478 2474 1
50 % 3008 5011 1
40 % 3008 5011 1
30 % 3501 5941 1
Entity #2 | Chains: H
IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41853
95 % 2 2 31925 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 21 30 1198
70 % 1453 2424 2
50 % 3009 5011 1
40 % 3009 5011 1
30 % 3502 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures