Sequence Similarity Clusters for the Entities in PDB 1B9Y

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 14791
95 % 25 35 1354 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 25 35 1381
70 % 25 35 1399
50 % 26 36 1375
40 % 26 38 1325
30 % 26 38 1301
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7501
95 % 5 6 8080 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 5 6 8032
70 % 5 6 7764
50 % 5 6 7152
40 % 5 6 6646
30 % 5 6 5927
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58485
95 % 1 2 29902 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 2 28860
70 % 2 3 20224
50 % 2 3 17528
40 % 2 3 15637
30 % 2 3 13372

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.