Sequence Similarity Clusters for the Entities in PDB 1B9Y

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15026
95 % 28 38 1250 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 28 38 1276
70 % 28 38 1309
50 % 29 39 1303
40 % 29 41 1261
30 % 29 41 1233
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7634
95 % 5 6 8192 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 5 6 8142
70 % 5 6 7866
50 % 5 6 7253
40 % 5 6 6742
30 % 5 6 6009
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59296
95 % 1 2 30336 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 2 29270
70 % 2 3 20514
50 % 2 3 17770
40 % 2 3 15844
30 % 2 3 13551

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures