Sequence Similarity Clusters for the Entities in PDB 1B9Y

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 14332
95 % 25 35 1322 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 25 35 1346
70 % 25 35 1362
50 % 26 36 1338
40 % 26 38 1284
30 % 26 38 1266
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7284
95 % 5 6 7826 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 5 6 7785
70 % 5 6 7508
50 % 5 6 6926
40 % 5 6 6438
30 % 5 6 5742
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56905
95 % 1 2 29045 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 2 28040
70 % 2 3 19683
50 % 2 3 17084
40 % 2 3 15242
30 % 2 3 13035

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.