Sequence Similarity Clusters for the Entities in PDB 1B9X

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 39 1064
95 % 30 41 1214 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 30 41 1231
70 % 30 41 1260
50 % 31 42 1269
40 % 31 42 1262
30 % 31 42 1263
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 8410
95 % 6 6 8463 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 6 6 8387
70 % 6 6 8073
50 % 6 6 7428
40 % 6 6 6830
30 % 6 6 5984
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36469
95 % 2 2 31071 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 29777
70 % 3 3 22817
50 % 3 3 19590
40 % 3 3 17310
30 % 3 3 14228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures