Sequence Similarity Clusters for the Entities in PDB 1B9X

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14440
95 % 26 35 1330 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 26 35 1355
70 % 26 35 1371
50 % 27 36 1351
40 % 27 38 1300
30 % 27 38 1278
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 7339
95 % 6 6 7890
90 % 6 6 7849
70 % 6 6 7563
50 % 6 6 6970
40 % 6 6 6484
30 % 6 6 5781
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57263
95 % 2 2 29230 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 28218
70 % 3 3 19805
50 % 3 3 17185
40 % 3 3 15335
30 % 3 3 13111

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.