Sequence Similarity Clusters for the Entities in PDB 1B9X

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 14669
95 % 26 35 1345
90 % 26 35 1371
70 % 26 35 1388
50 % 27 36 1364
40 % 27 38 1314
30 % 27 38 1293
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7437
95 % 6 6 8009 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 6 6 7967
70 % 6 6 7714
50 % 6 6 7101
40 % 6 6 6599
30 % 6 6 5885
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58089
95 % 2 2 29726 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 28683
70 % 3 3 20120
50 % 3 3 17436
40 % 3 3 15554
30 % 3 3 13298

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.