Sequence Similarity Clusters for the Entities in PDB 1B9X

Entity #1 | Chains: A
PROTEIN (TRANSDUCIN) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14979
95 % 29 38 1245 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 29 38 1272
70 % 29 38 1307
50 % 30 39 1300
40 % 30 41 1259
30 % 30 41 1232
Entity #2 | Chains: B
PROTEIN (TRANSDUCIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7602
95 % 6 6 8164 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 6 6 8111
70 % 6 6 7837
50 % 6 6 7224
40 % 6 6 6715
30 % 6 6 5984
Entity #3 | Chains: C
PROTEIN (PHOSDUCIN) protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59162
95 % 2 2 30259 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 29195
70 % 3 3 20462
50 % 3 3 17724
40 % 3 3 15805
30 % 3 3 13516

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures