Sequence Similarity Clusters for the Entities in PDB 1B8M

Entity #1 | Chains: A
PROTEIN (BRAIN DERIVED NEUROTROPHIC FACTOR) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41103
95 % 2 2 34606 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 33078
70 % 2 2 29498
50 % 15 24 1320
40 % 15 24 1314
30 % 15 24 1306
Entity #2 | Chains: B
PROTEIN (NEUROTROPHIN-4) protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15860
95 % 1 3 14749 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 1 3 14457
70 % 1 3 13533
50 % 16 24 1320
40 % 16 24 1314
30 % 16 24 1306

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures