Sequence Similarity Clusters for the Entities in PDB 1B8M

Entity #1 | Chains: A
PROTEIN (BRAIN DERIVED NEUROTROPHIC FACTOR) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69975
95 % 2 2 35569 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 33955
70 % 2 2 30181
50 % 15 24 1312
40 % 15 24 1324
30 % 15 24 1300
Entity #2 | Chains: B
PROTEIN (NEUROTROPHIN-4) protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16453
95 % 1 3 15335 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 1 3 15053
70 % 1 3 14106
50 % 16 24 1312
40 % 16 24 1324
30 % 16 24 1300

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures