Sequence Similarity Clusters for the Entities in PDB 1B8M

Entity #1 | Chains: A
PROTEIN (BRAIN DERIVED NEUROTROPHIC FACTOR) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68624
95 % 2 2 34908 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 33345
70 % 2 2 29655
50 % 15 24 1286
40 % 15 24 1299
30 % 15 24 1274
Entity #2 | Chains: B
PROTEIN (NEUROTROPHIN-4) protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16048
95 % 1 3 14996 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 1 3 14731
70 % 1 3 13822
50 % 16 24 1286
40 % 16 24 1299
30 % 16 24 1274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures