Sequence Similarity Clusters for the Entities in PDB 1B8I

Entity #1 | Chains: C
DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71537
95 % 1 1 49518
90 % 1 1 46969
70 % 1 1 41174
50 % 1 1 35120
40 % 1 1 30963
30 % 1 1 26124
Entity #4 | Chains: B
PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30070
95 % 1 3 24931 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 24117
70 % 1 3 21929
50 % 1 3 18986
40 % 1 3 16905
30 % 20 94 386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.