Sequence Similarity Clusters for the Entities in PDB 1B8I

Entity #1 | Chains: C
DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73474
95 % 1 1 50774
90 % 1 1 48106
70 % 1 1 42130
50 % 1 1 35905
40 % 1 1 31650
30 % 1 1 26694
Entity #4 | Chains: B
PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30990
95 % 1 3 25649 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 24792
70 % 1 3 22514
50 % 1 3 19468
40 % 1 3 17315
30 % 21 98 395

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures