Sequence Similarity Clusters for the Entities in PDB 1B8I

Entity #1 | Chains: C
DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58004
95 % 1 1 47474
90 % 1 1 45107
70 % 1 1 39619
50 % 1 1 33610
40 % 1 1 29435
30 % 1 1 24569
Entity #4 | Chains: B
PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28049
95 % 1 3 24584 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 23757
70 % 1 3 23007
50 % 1 3 18566
40 % 1 3 16408
30 % 21 92 432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures