Sequence Similarity Clusters for the Entities in PDB 1B8I

Entity #1 | Chains: C
DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72568
95 % 1 1 50176
90 % 1 1 47558
70 % 1 1 41666
50 % 1 1 35520
40 % 1 1 31303
30 % 1 1 26396
Entity #4 | Chains: B
PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30583
95 % 1 3 25315 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 24474
70 % 1 3 22241
50 % 1 3 19255
40 % 1 3 17130
30 % 20 94 412

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures