Sequence Similarity Clusters for the Entities in PDB 1B8I

Entity #1 | Chains: C
DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69639
95 % 1 1 48165
90 % 1 1 45732
70 % 1 1 40243
50 % 1 1 34408
40 % 1 1 30354
30 % 1 1 25603
Entity #4 | Chains: B
PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29209
95 % 1 3 24202 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 23430
70 % 1 3 21418
50 % 1 3 18586
40 % 1 3 16552
30 % 20 94 373

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.