Sequence Similarity Clusters for the Entities in PDB 1B8D

Entity #1 | Chains: A,K
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN)) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42350
95 % 1 1 32021 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 30641
70 % 3 9 1288
50 % 3 9 1333
40 % 13 46 286
30 % 33 124 125
Entity #2 | Chains: B,L
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41763
95 % 1 1 31628 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 30268
70 % 9 13 1632
50 % 19 54 246
40 % 21 76 199
30 % 34 124 125
Entity #3 | Chains: G
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN)) protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.