Sequence Similarity Clusters for the Entities in PDB 1B8D

Entity #1 | Chains: A,K
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN)) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42996
95 % 1 1 32518 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 31101
70 % 5 11 812
50 % 5 11 853
40 % 15 48 253
30 % 37 128 115
Entity #2 | Chains: B,L
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42404
95 % 1 1 32124 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 30728
70 % 9 13 1657
50 % 21 56 211
40 % 23 78 186
30 % 38 128 115
Entity #3 | Chains: G
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN)) protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.