Sequence Similarity Clusters for the Entities in PDB 1B8D

Entity #1 | Chains: A,K
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN)) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39738
95 % 1 1 30039
90 % 1 1 28790
70 % 3 9 1210
50 % 3 9 1249
40 % 13 44 276
30 % 33 118 124
Entity #2 | Chains: B,L
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39187
95 % 1 1 29676
90 % 1 1 28445
70 % 9 13 1530
50 % 19 52 227
40 % 21 72 191
30 % 34 118 124
Entity #3 | Chains: G
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN)) protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.