Sequence Similarity Clusters for the Entities in PDB 1B8D

Entity #1 | Chains: A,K
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN)) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43480
95 % 1 1 32881 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 82
70 % 5 12 74
50 % 5 12 101
40 % 15 54 61
30 % 37 143 18
Entity #2 | Chains: B,L
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42880
95 % 1 1 32478 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 73
70 % 9 14 79
50 % 21 62 38
40 % 23 87 24
30 % 38 143 18
Entity #3 | Chains: G
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN)) protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.