Sequence Similarity Clusters for the Entities in PDB 1B8D

Entity #1 | Chains: A,K
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN)) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40252
95 % 1 1 30431
90 % 1 1 29162
70 % 3 9 1225
50 % 3 9 1269
40 % 13 44 284
30 % 33 118 127
Entity #2 | Chains: B,L
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN)) protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39693
95 % 1 1 30063
90 % 1 1 28811
70 % 9 13 1546
50 % 19 52 231
40 % 21 72 193
30 % 34 118 127
Entity #3 | Chains: G
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN)) protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.