Sequence Similarity Clusters for the Entities in PDB 1B88

Entity #1 | Chains: A,B
T CELL RECEPTOR V-ALPHA DOMAIN protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41887
95 % 1 1 35201 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 33172
70 % 4 5 7657
50 % 4 5 7036
40 % 232 363 27
30 % 4110 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures