Sequence Similarity Clusters for the Entities in PDB 1B86

Entity #1 | Chains: A,C
PROTEIN (HEMOGLOBIN; ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 254 12
95 % 195 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 195 265 18
70 % 229 332 17
50 % 541 755 4
40 % 546 760 7
30 % 1014 1299 6
Entity #2 | Chains: B,D
PROTEIN (HEMOGLOBIN; BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 162 215 41
95 % 192 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 196 256 21
70 % 246 347 14
50 % 542 755 4
40 % 547 760 7
30 % 1015 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures