Sequence Similarity Clusters for the Entities in PDB 1B72

Entity #1 | Chains: D
DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (HOMEOBOX PROTEIN HOX-B1) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70868
95 % 1 1 48902
90 % 1 1 46351
70 % 1 1 40610
50 % 1 1 34618
40 % 1 1 30520
30 % 1 1 25774
Entity #4 | Chains: B
PROTEIN (PBX1) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71694
95 % 1 2 36139
90 % 4 5 13319
70 % 4 5 12523
50 % 4 5 11171
40 % 4 5 10127
30 % 4 5 8830

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures