Sequence Similarity Clusters for the Entities in PDB 1B72

Entity #1 | Chains: D
DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (HOMEOBOX PROTEIN HOX-B1) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69453
95 % 1 1 47974
90 % 1 1 45519
70 % 1 1 39938
50 % 1 1 34050
40 % 1 1 30029
30 % 1 1 25354
Entity #4 | Chains: B
PROTEIN (PBX1) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70268
95 % 1 2 35407
90 % 4 5 13034
70 % 4 5 12268
50 % 4 5 10942
40 % 4 5 9929
30 % 4 5 8650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.