Sequence Similarity Clusters for the Entities in PDB 1B72

Entity #1 | Chains: D
DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (HOMEOBOX PROTEIN HOX-B1) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58274
95 % 1 1 47683
90 % 1 1 45297
70 % 1 1 39798
50 % 1 1 33771
40 % 1 1 29589
30 % 1 1 24700
Entity #4 | Chains: B
PROTEIN (PBX1) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56738
95 % 1 2 35737
90 % 4 5 11509
70 % 4 5 10875
50 % 4 5 9765
40 % 4 5 8838
30 % 4 5 7629

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures