Sequence Similarity Clusters for the Entities in PDB 1B72

Entity #1 | Chains: D
DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (HOMEOBOX PROTEIN HOX-B1) protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66697
95 % 1 1 45977
90 % 1 1 43683
70 % 1 1 38469
50 % 1 1 32922
40 % 1 1 29056
30 % 1 1 24532
Entity #4 | Chains: B
PROTEIN (PBX1) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67503
95 % 1 2 33914
90 % 4 5 12435
70 % 4 5 11679
50 % 4 5 10465
40 % 4 5 9489
30 % 4 5 8269

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.