Sequence Similarity Clusters for the Entities in PDB 1B5F

Entity #1 | Chains: A,C
PROTEIN (CARDOSIN A) protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39658
95 % 1 1 30516 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 29442
70 % 1 1 26501
50 % 1 1 22650
40 % 1 1 19939
30 % 1 1 16907
Entity #2 | Chains: B,D
PROTEIN (CARDOSIN A) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48415
95 % 1 1 36138 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 34509
70 % 1 1 30666
50 % 1 1 26208
40 % 1 1 23105
30 % 1 1 19569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures