Sequence Similarity Clusters for the Entities in PDB 1B5F

Entity #1 | Chains: A,C
PROTEIN (CARDOSIN A) protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40492
95 % 1 1 31113 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 30001
70 % 1 1 26986
50 % 1 1 23028
40 % 1 1 20271
30 % 1 1 17177
Entity #2 | Chains: B,D
PROTEIN (CARDOSIN A) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49388
95 % 1 1 36822 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 35140
70 % 1 1 31210
50 % 1 1 26636
40 % 1 1 23488
30 % 1 1 19879

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures