Sequence Similarity Clusters for the Entities in PDB 1B4U

Entity #1 | Chains: A,C
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21928
95 % 2 2 19787 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19211
70 % 2 2 17632
50 % 2 2 15345
40 % 2 2 13659
30 % 2 2 11505
Entity #2 | Chains: B,D
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24475
95 % 2 2 21839 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 21151
70 % 2 2 19314
50 % 2 2 16714
40 % 2 2 14805
30 % 2 2 12421

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures