Sequence Similarity Clusters for the Entities in PDB 1B4U

Entity #1 | Chains: A,C
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23621
95 % 2 2 21047 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20420
70 % 2 2 18733
50 % 2 2 16231
40 % 2 2 14384
30 % 2 2 12068
Entity #2 | Chains: B,D
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23657
95 % 2 2 21082 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20453
70 % 2 2 18759
50 % 2 2 16249
40 % 2 2 14399
30 % 2 2 12078

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures