Sequence Similarity Clusters for the Entities in PDB 1B4U

Entity #1 | Chains: A,C
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23527
95 % 2 2 20182 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19623
70 % 2 2 18086
50 % 2 2 15690
40 % 2 2 13959
30 % 2 2 11941
Entity #2 | Chains: B,D
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19872
95 % 2 2 17591 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 17237
70 % 2 2 16023
50 % 2 2 14020
40 % 2 2 12559
30 % 2 2 10812

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures