Sequence Similarity Clusters for the Entities in PDB 1B4U

Entity #1 | Chains: A,C
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24081
95 % 2 2 21475 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20814
70 % 2 2 19047
50 % 2 2 16490
40 % 2 2 14603
30 % 2 2 12273
Entity #2 | Chains: B,D
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24123
95 % 2 2 21509 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20847
70 % 2 2 19073
50 % 2 2 16508
40 % 2 2 14617
30 % 2 2 12283

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures