Sequence Similarity Clusters for the Entities in PDB 1B4U

Entity #1 | Chains: A,C
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24949
95 % 2 2 22251 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 21535
70 % 2 2 19644
50 % 2 2 16998
40 % 2 2 15059
30 % 2 2 12623
Entity #2 | Chains: B,D
PROTOCATECHUATE 4,5-DIOXYGENASE protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24992
95 % 2 2 22285 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 21569
70 % 2 2 19670
50 % 2 2 17017
40 % 2 2 15074
30 % 2 2 12634

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures