Sequence Similarity Clusters for the Entities in PDB 1B3T

Entity #1 | Chains: C,D
DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (NUCLEAR PROTEIN EBNA1) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40008
95 % 2 3 7730 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.0
PDBFlex
90 % 2 4 6402
70 % 2 4 5764
50 % 2 4 5430
40 % 2 4 5412
30 % 2 4 4761

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures