Sequence Similarity Clusters for the Entities in PDB 1B3H

Entity #1 | Chains: A
PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN protein, length: 517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 32 1143
95 % 26 32 1559 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.5
PDBFlex
90 % 26 32 1595
70 % 27 36 1028
50 % 27 36 1067
40 % 29 39 1013
30 % 31 42 912
Entity #2 | Chains: B
LYS-ALC-LYS PEPTIDE protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.