Sequence Similarity Clusters for the Entities in PDB 1B34

Entity #1 | Chains: A
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1) protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 868
95 % 3 11 1057 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 3 11 1087
70 % 3 12 1075
50 % 3 12 1126
40 % 3 12 1134
30 % 3 20 704
Entity #2 | Chains: B
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2) protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 783
95 % 3 12 966 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.8
PDBFlex
90 % 3 12 993
70 % 3 12 1026
50 % 3 28 681
40 % 3 28 720
30 % 3 28 722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures