Sequence Similarity Clusters for the Entities in PDB 1B33

Entity #1 | Chains: A,C,E,H,J,L
ALLOPHYCOCYANIN, ALPHA CHAIN protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13430
95 % 1 1 12836 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 12619
70 % 4 10 1413
50 % 5 13 1141
40 % 46 87 24
30 % 78 143 17
Entity #2 | Chains: B,D,F,I,K,M
ALLOPHYCOCYANIN, BETA CHAIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13416
95 % 1 1 12822 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 8 2738
70 % 5 12 1098
50 % 5 12 1142
40 % 47 87 24
30 % 79 143 17
Entity #3 | Chains: N,O
PHYCOBILISOME 7.8 KD LINKER POLYPEPTIDE protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48461
95 % 1 1 36200 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 34586
70 % 1 1 30768
50 % 1 1 26315
40 % 1 1 23222
30 % 1 1 19703

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.