Sequence Similarity Clusters for the Entities in PDB 1B33

Entity #1 | Chains: A,C,E,H,J,L
ALLOPHYCOCYANIN, ALPHA CHAIN protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13941
95 % 1 1 13283 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 13062
70 % 4 10 1458
50 % 5 13 1182
40 % 46 87 32
30 % 78 143 18
Entity #2 | Chains: B,D,F,I,K,M
ALLOPHYCOCYANIN, BETA CHAIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13927
95 % 1 1 13269 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 8 2854
70 % 5 12 1134
50 % 5 12 1183
40 % 47 87 32
30 % 79 143 18
Entity #3 | Chains: N,O
PHYCOBILISOME 7.8 KD LINKER POLYPEPTIDE protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50026
95 % 1 1 37315 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 35603
70 % 1 1 31626
50 % 1 1 27008
40 % 1 1 23836
30 % 1 1 20213

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures