Sequence Similarity Clusters for the Entities in PDB 1B33

Entity #1 | Chains: A,C,E,H,J,L
ALLOPHYCOCYANIN, ALPHA CHAIN protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 13201
95 % 1 1 12630
90 % 1 1 12427
70 % 4 9 3280
50 % 5 11 2105
40 % 41 76 199
30 % 68 124 125
Entity #2 | Chains: B,D,F,I,K,M
ALLOPHYCOCYANIN, BETA CHAIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 13187
95 % 1 1 12616
90 % 5 8 2693
70 % 5 11 2110
50 % 5 11 2106
40 % 42 76 199
30 % 69 124 125
Entity #3 | Chains: N,O
PHYCOBILISOME 7.8 KD LINKER POLYPEPTIDE protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47820
95 % 1 1 35731
90 % 1 1 34144
70 % 1 1 30406
50 % 1 1 26025
40 % 1 1 22966
30 % 1 1 19477

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.