Sequence Similarity Clusters for the Entities in PDB 1B33

Entity #1 | Chains: A,C,E,H,J,L
ALLOPHYCOCYANIN, ALPHA CHAIN protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 12552
95 % 1 1 12005
90 % 1 1 11813
70 % 4 8 3395
50 % 5 10 2083
40 % 41 73 195
30 % 68 120 122
Entity #2 | Chains: B,D,F,I,K,M
ALLOPHYCOCYANIN, BETA CHAIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 12538
95 % 1 1 11992
90 % 5 8 2572
70 % 5 10 2103
50 % 5 10 2084
40 % 42 73 195
30 % 69 120 122
Entity #3 | Chains: N,O
PHYCOBILISOME 7.8 KD LINKER POLYPEPTIDE protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45695
95 % 1 1 34124
90 % 1 1 32658
70 % 1 1 29187
50 % 1 1 25043
40 % 1 1 22108
30 % 1 1 18749

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.