Sequence Similarity Clusters for the Entities in PDB 1B33

Entity #1 | Chains: A,C,E,H,J,L
ALLOPHYCOCYANIN, ALPHA CHAIN protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13729
95 % 1 1 13089 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 12873
70 % 4 10 1445
50 % 5 13 1165
40 % 46 87 30
30 % 78 143 18
Entity #2 | Chains: B,D,F,I,K,M
ALLOPHYCOCYANIN, BETA CHAIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13715
95 % 1 1 13075 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 8 2813
70 % 5 12 1118
50 % 5 12 1166
40 % 47 87 30
30 % 79 143 18
Entity #3 | Chains: N,O
PHYCOBILISOME 7.8 KD LINKER POLYPEPTIDE protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49455
95 % 1 1 36899 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 35220
70 % 1 1 31297
50 % 1 1 26740
40 % 1 1 23595
30 % 1 1 20006

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures