Sequence Similarity Clusters for the Entities in PDB 1B0G

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 179 204 53
95 % 226 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 273 309 36
70 % 639 736 6
50 % 650 750 6
40 % 681 792 10
30 % 757 923 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 547 634 2
95 % 585 678 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 594 687 4
70 % 782 940 4
50 % 796 962 3
40 % 796 962 7
30 % 796 962 12
Entity #3 | Chains: C,F
PEPTIDE P1049 (ALWGFFPVL) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures