Sequence Similarity Clusters for the Entities in PDB 1B08

Entity #1 | Chains: A,B,C
PROTEIN (LUNG SURFACTANT PROTEIN D) protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29021
95 % 16 17 702 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 16 17 733
70 % 17 18 763
50 % 17 18 809
40 % 50 55 361
30 % 58 65 277

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures