Sequence Similarity Clusters for the Entities in PDB 1B08

Entity #1 | Chains: A,B,C
PROTEIN (LUNG SURFACTANT PROTEIN D) protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29604
95 % 16 17 709 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 16 17 738
70 % 17 18 773
50 % 17 18 824
40 % 50 55 382
30 % 58 65 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures