Sequence Similarity Clusters for the Entities in PDB 1B08

Entity #1 | Chains: A,B,C
PROTEIN (LUNG SURFACTANT PROTEIN D) protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28590
95 % 16 17 689 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 16 17 716
70 % 17 18 758
50 % 17 18 804
40 % 50 55 339
30 % 58 65 272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.