Sequence Similarity Clusters for the Entities in PDB 1AZS

Entity #1 | Chains: A
VC1 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 16 3251
95 % 1 16 4011 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 16 4039
70 % 1 16 3971
50 % 1 16 3850
40 % 1 16 3680
30 % 1 16 3423
Entity #2 | Chains: B
IIC2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 17 2750
95 % 2 17 3445 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 2 17 3493
70 % 2 17 3439
50 % 2 17 3361
40 % 2 17 3253
30 % 7 22 2193
Entity #3 | Chains: C
GS-ALPHA protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 4501
95 % 1 20 2819 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.5
PDBFlex
90 % 1 20 2864
70 % 1 20 2834
50 % 1 20 2808
40 % 29 97 343
30 % 29 99 335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.