Sequence Similarity Clusters for the Entities in PDB 1AZQ

Entity #1 | Chains: B,C
DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11009
95 % 6 16 3874 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 6 16 3918
70 % 9 26 2087
50 % 9 26 2091
40 % 9 26 2094
30 % 9 26 2017

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures