Sequence Similarity Clusters for the Entities in PDB 1AZP

Entity #1 | Chains: B,C
DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10789
95 % 3 16 3790 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 16 3830
70 % 5 26 2041
50 % 5 26 2042
40 % 5 26 2045
30 % 5 26 1977

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.