Sequence Similarity Clusters for the Entities in PDB 1AYA

Entity #1 | Chains: A,B
PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 7747
95 % 2 8 8316 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 8 8258
70 % 2 8 7981
50 % 2 8 7351
40 % 2 9 6274
30 % 92 231 154
Entity #2 | Chains: P,Q
PEPTIDE PDGFR-1009 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures