Sequence Similarity Clusters for the Entities in PDB 1AXS

Entity #1 | Chains: A,L
OXY-COPE CATALYTIC ANTIBODY protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41141
95 % 3 4 12470 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 3 4 12264
70 % 1243 2327 1
50 % 2538 4713 1
40 % 2538 4713 1
30 % 2913 5567 1
Entity #2 | Chains: B,H
OXY-COPE CATALYTIC ANTIBODY protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40132
95 % 3 4 12385 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 6 9 5793
70 % 1232 2280 2
50 % 2539 4713 1
40 % 2539 4713 1
30 % 2914 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.