Sequence Similarity Clusters for the Entities in PDB 1AXS

Entity #1 | Chains: A,L
OXY-COPE CATALYTIC ANTIBODY protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31074
95 % 3 4 13826 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 3 4 13585
70 % 1352 2516 1
50 % 2762 5101 1
40 % 3157 5750 1
30 % 3872 7168 1
Entity #2 | Chains: B,H
OXY-COPE CATALYTIC ANTIBODY protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31073
95 % 3 4 12187 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 6 9 6227
70 % 1342 2475 2
50 % 2763 5101 1
40 % 3158 5750 1
30 % 3873 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures