Sequence Similarity Clusters for the Entities in PDB 1AXC

Entity #1 | Chains: A,C,E
PCNA protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 27 415
95 % 14 31 452 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.8
PDBFlex
90 % 14 31 486
70 % 15 33 493
50 % 16 36 471
40 % 18 62 336
30 % 35 104 227
Entity #2 | Chains: B,D,F
P21/WAF1 protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 3187
95 % 4 5 3488
90 % 4 5 3555
70 % 4 5 3494
50 % 4 5 3405
40 % 4 5 3270
30 % 4 5 3025

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5E0U 2 D, E, F Cyclin-dependent kinase inhibitor 1 9606
2 4RJF 2 B, D, F Cyclin-dependent kinase inhibitor 1 22 C TERMINAL RESIDUES (139 - 160) 9606
3 2ZVV 2 X, Y Cyclin-dependent kinase inhibitor 1 UNP residues 139-160 9606
4 1AXC 2 B, D, F P21/WAF1 22 C TERMINAL RESIDUES (139 - 160) 9606
5 2ZVW 2 I, J, K, L, M, N, O, P Cyclin-dependent kinase inhibitor 1 UNP residues 139-160 9606