Sequence Similarity Clusters for the Entities in PDB 1AWV

Entity #1 | Chains: A,B,C,D,E,F
CYCLOPHILIN A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 103 112 122
95 % 117 126 149 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 118 127 158
70 % 174 184 139
50 % 212 223 117
40 % 226 241 135
30 % 233 251 135
Entity #2 | Chains: G,H,I,J,K,L
PEPTIDE FROM THE HIV-1 CAPSID PROTEIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures