Sequence Similarity Clusters for the Entities in PDB 1AWU

Entity #1 | Chains: A
CYCLOPHILIN A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 40 672
95 % 116 128 150 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 117 129 159
70 % 173 186 143
50 % 216 234 120
40 % 224 243 136
30 % 231 253 143
Entity #2 | Chains: B
PEPTIDE FROM THE HIV-1 CAPSID PROTEIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures