Sequence Similarity Clusters for the Entities in PDB 1AWT

Entity #1 | Chains: A,B,C,D,E,F
CYCLOPHILIN A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 104 112 112
95 % 118 126 142 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 119 127 151
70 % 175 184 125
50 % 213 223 108
40 % 227 241 125
30 % 234 251 130
Entity #2 | Chains: G,H,I,J,K,L
PEPTIDE FROM THE HIV-1 CAPSID PROTEIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.