Sequence Similarity Clusters for the Entities in PDB 1AWT

Entity #1 | Chains: A,B,C,D,E,F
CYCLOPHILIN A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 101 148
95 % 107 115 148 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 108 116 157
70 % 164 173 134
50 % 202 211 112
40 % 216 228 128
30 % 223 238 136
Entity #2 | Chains: G,H,I,J,K,L
PEPTIDE FROM THE HIV-1 CAPSID PROTEIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.