Sequence Similarity Clusters for the Entities in PDB 1AWT

Entity #1 | Chains: A,B,C,D,E,F
CYCLOPHILIN A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 100 121
95 % 106 114 148
90 % 107 115 156
70 % 163 172 132
50 % 201 210 112
40 % 215 227 128
30 % 222 237 133
Entity #2 | Chains: G,H,I,J,K,L
PEPTIDE FROM THE HIV-1 CAPSID PROTEIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.