Sequence Similarity Clusters for the Entities in PDB 1AWR

Entity #1 | Chains: A,B,C,D,E,F
CYCLOPHILIN A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 112 117
95 % 105 126 148 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 106 127 158
70 % 161 184 137
50 % 193 223 115
40 % 202 241 135
30 % 209 251 133
Entity #2 | Chains: G,H,I,J,K,L
PEPTIDE FROM THE HIV-1 CAPSID PROTEIN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures