Sequence Similarity Clusters for the Entities in PDB 1AWH

Entity #1 | Chains: A,C
ALPHA THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 320 334 52
95 % 326 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 326 342 67
70 % 326 342 79
50 % 326 342 111
40 % 326 342 134
30 % 326 342 147
Entity #2 | Chains: B,D
ALPHA THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 320 332 53
95 % 362 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 367 385 56
70 % 385 409 47
50 % 385 409 85
40 % 1783 1873 4
30 % 1794 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures