Sequence Similarity Clusters for the Entities in PDB 1AWH

Entity #1 | Chains: A,C
ALPHA THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 320 335 45
95 % 321 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 321 336 66
70 % 322 338 78
50 % 322 338 107
40 % 322 338 131
30 % 322 338 136
Entity #2 | Chains: B,D
ALPHA THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 279 290 57
95 % 358 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 363 381 39
70 % 381 405 46
50 % 381 405 84
40 % 1624 1698 4
30 % 1760 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures