Sequence Similarity Clusters for the Entities in PDB 1AWF

Entity #1 | Chains: L
ALPHA THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 338 45
95 % 245 339 62
90 % 245 339 66
70 % 245 341 78
50 % 245 341 107
40 % 245 341 130
30 % 245 341 137
Entity #2 | Chains: H
ALPHA THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 217 290 58
95 % 272 377 35
90 % 275 384 39
70 % 280 408 46
50 % 280 408 84
40 % 1299 1719 4
30 % 1397 1869 6
Entity #3 | Chains: I
HIRUGEN protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures