Sequence Similarity Clusters for the Entities in PDB 1AWC

Entity #1 | Chains: D
DNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (GA BINDING PROTEIN ALPHA) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68083
95 % 1 1 46971
90 % 1 1 44570
70 % 1 1 39100
50 % 2 6 7041
40 % 2 6 6542
30 % 2 6 5838
Entity #4 | Chains: B
PROTEIN (GA BINDING PROTEIN BETA 1) protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64038
95 % 1 1 44327
90 % 1 1 42089
70 % 1 1 37025
50 % 51 92 215
40 % 67 121 189
30 % 130 220 66

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.