Sequence Similarity Clusters for the Entities in PDB 1AWC

Entity #1 | Chains: D
DNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (GA BINDING PROTEIN ALPHA) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55014
95 % 1 1 45190
90 % 1 1 42986
70 % 1 1 37875
50 % 10 17 1972
40 % 10 17 1952
30 % 10 17 1860
Entity #4 | Chains: B
PROTEIN (GA BINDING PROTEIN BETA 1) protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61414
95 % 1 1 50018
90 % 1 1 47468
70 % 1 1 41599
50 % 64 118 190
40 % 81 150 170
30 % 187 327 41

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures