Sequence Similarity Clusters for the Entities in PDB 1AWC

Entity #1 | Chains: D
DNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (GA BINDING PROTEIN ALPHA) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68948
95 % 1 1 47560
90 % 1 1 45089
70 % 1 1 39509
50 % 2 6 7125
40 % 2 6 6622
30 % 2 6 5906
Entity #4 | Chains: B
PROTEIN (GA BINDING PROTEIN BETA 1) protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64859
95 % 1 1 44904
90 % 1 1 42597
70 % 1 1 37431
50 % 52 95 213
40 % 68 124 190
30 % 133 226 64

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures