Sequence Similarity Clusters for the Entities in PDB 1AW8

Entity #1 | Chains: A,D
L-ASPARTATE-ALPHA-DECARBOXYLASE protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22010
95 % 2 2 19856 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 2 2 19274
70 % 2 2 17679
50 % 2 2 15386
40 % 2 2 13690
30 % 2 2 11534
Entity #2 | Chains: B,E
L-ASPARTATE-ALPHA-DECARBOXYLASE protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39578
95 % 8 8 5729 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 0.8
PDBFlex
90 % 8 8 5747
70 % 8 8 5604
50 % 8 8 5311
40 % 13 13 3639
30 % 13 13 3327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LS7 3 D Aspartate 1-decarboxylase The N-terminal residue is a pyruvoyl moiety formed after post-translation backbone cleavage after protein folding. Cysteine 78 is oxidised. 562 4.1.1.11 | Details
2 4AON 2 B, E ASPARTATE-ALPHA-DECARBOXYLASE ALPHA CHAIN POSTTRANSLATIONAL MAIN CHAIN BREAK BETWEEN CHAIN A GLY24 AND CHAIN B SER25. SAME FOR CHAINS C AND D. SERINE 25 MODIFIED TO YIELD A PYRUVOYL COFACTOR IN BOTH CASES. IN THIS STRUCTURE THE BOUND LIGAND HAS FORMED A COVALENT IMINIUM INTERMEDIATE WITH PYR -25 IN BOTH SUBUNITS IN THE ASYMMETRIC UNIT 562 4.1.1.11 | Details
3 4AOK 2 B, E ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN POSTTRANSLATIONAL MAIN CHAIN BREAK BETWEEN CHAIN A GLY24 AND CHAIN B SER25. SAME FOR CHAINS D AND E. SERINE 25 MODIFIED TO YIELD A PYRUVOYL COFACTOR IN BOTH CASES. IN THIS STRUCTURE THE BOUND LIGAND HAS FORMED A COVALENT IMINIUM INTERMEDIATE WITH PYR 25 IN BOTH SUBUNITS IN THE ASYMMETRIC UNIT. 562 4.1.1.11 | Details
4 4CRY 3 G ASPARTATE 1-DECARBOXYLASE RESIDUES 25-126 AFTER CLEAVAGE OF POLYPEPTIDE CHAIN BACKBONE BETWEEN RESIDUES G24 AND S25 562 4.1.1.11 | Details
5 3TM7 2 B, D Aspartate 1-decarboxylase alpha chain 562 4.1.1.11 | Details
6 1PYU 2 B, D Aspartate 1-decarboxylase alfa chain 562 4.1.1.11 | Details
7 4D7Z 2 B ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN RESIDUE 25 IS A COVALENTLY LINKED PYRUVOYL COFACTOR, DERIVED FROM POSTTRANSLATIONAL MODIFICATION OF THE ZYMOGEN. RESIDUES 25-119 562 4.1.1.11 | Details
8 1AW8 2 B, E L-ASPARTATE-ALPHA-DECARBOXYLASE microheterogeneity at residue B25 562 4.1.1.11 | Details