Sequence Similarity Clusters for the Entities in PDB 1AW8

Entity #1 | Chains: A,D
L-ASPARTATE-ALPHA-DECARBOXYLASE protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21408
95 % 2 2 19286 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 2 2 18751
70 % 2 2 17280
50 % 2 2 15055
40 % 2 2 13384
30 % 2 2 11271
Entity #2 | Chains: B,E
L-ASPARTATE-ALPHA-DECARBOXYLASE protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38570
95 % 8 8 5543 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 0.8
PDBFlex
90 % 8 8 5572
70 % 8 8 5457
50 % 8 8 5185
40 % 13 13 3543
30 % 13 13 3261

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LS7 3 D Aspartate 1-decarboxylase The N-terminal residue is a pyruvoyl moiety formed after post-translation backbone cleavage after protein folding. Cysteine 78 is oxidised. 562 4.1.1.11 | Details
2 4AON 2 B, E ASPARTATE-ALPHA-DECARBOXYLASE ALPHA CHAIN POSTTRANSLATIONAL MAIN CHAIN BREAK BETWEEN CHAIN A GLY24 AND CHAIN B SER25. SAME FOR CHAINS C AND D. SERINE 25 MODIFIED TO YIELD A PYRUVOYL COFACTOR IN BOTH CASES. IN THIS STRUCTURE THE BOUND LIGAND HAS FORMED A COVALENT IMINIUM INTERMEDIATE WITH PYR -25 IN BOTH SUBUNITS IN THE ASYMMETRIC UNIT 562 4.1.1.11 | Details
3 4AOK 2 B, E ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN POSTTRANSLATIONAL MAIN CHAIN BREAK BETWEEN CHAIN A GLY24 AND CHAIN B SER25. SAME FOR CHAINS D AND E. SERINE 25 MODIFIED TO YIELD A PYRUVOYL COFACTOR IN BOTH CASES. IN THIS STRUCTURE THE BOUND LIGAND HAS FORMED A COVALENT IMINIUM INTERMEDIATE WITH PYR 25 IN BOTH SUBUNITS IN THE ASYMMETRIC UNIT. 562 4.1.1.11 | Details
4 4CRY 3 G ASPARTATE 1-DECARBOXYLASE RESIDUES 25-126 AFTER CLEAVAGE OF POLYPEPTIDE CHAIN BACKBONE BETWEEN RESIDUES G24 AND S25 562 4.1.1.11 | Details
5 1VC3 2 B L-Aspartate-alpha-Decarboxylase heavy chain 274 4.1.1.11 | Details
6 2EEO 2 B Aspartate 1-decarboxylase Aspartate 1-decarboxylase alpha chain 274 4.1.1.11 | Details
7 1UHE 2 A Aspartate 1-decarboxylase alpha chain 210 4.1.1.11 | Details
8 3TM7 2 B, D Aspartate 1-decarboxylase alpha chain 562 4.1.1.11 | Details
9 3PLX 2 B Aspartate 1-decarboxylase UNP residues 25-126 197 4.1.1.11 | Details
10 1PYU 2 B, D Aspartate 1-decarboxylase alfa chain 562 4.1.1.11 | Details
11 4D7Z 2 B ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN RESIDUE 25 IS A COVALENTLY LINKED PYRUVOYL COFACTOR, DERIVED FROM POSTTRANSLATIONAL MODIFICATION OF THE ZYMOGEN. RESIDUES 25-119 562 4.1.1.11 | Details
12 1UHD 2 A Aspartate 1-decarboxylase alpha chain 210 4.1.1.11 | Details
13 1AW8 2 B, E L-ASPARTATE-ALPHA-DECARBOXYLASE microheterogeneity at residue B25 562 4.1.1.11 | Details