Sequence Similarity Clusters for the Entities in PDB 1AW8

Entity #1 | Chains: A,D
L-ASPARTATE-ALPHA-DECARBOXYLASE protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21408
95 % 2 2 19286 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 2 2 18751
70 % 2 2 17280
50 % 2 2 15055
40 % 2 2 13384
30 % 2 2 11271
Entity #2 | Chains: B,E
L-ASPARTATE-ALPHA-DECARBOXYLASE protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38570
95 % 8 8 5543 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 0.8
PDBFlex
90 % 8 8 5572
70 % 8 8 5457
50 % 8 8 5185
40 % 13 13 3543
30 % 13 13 3261

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TM7 1 A, C Aspartate 1-decarboxylase beta chain 562 4.1.1.11 | Details
2 1AW8 1 A, D L-ASPARTATE-ALPHA-DECARBOXYLASE 562 4.1.1.11 | Details