Sequence Similarity Clusters for the Entities in PDB 1AVX

Entity #1 | Chains: A
TRYPSIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 33 1118
95 % 25 33 1335 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 25 33 1359
70 % 465 558 19
50 % 522 710 14
40 % 1146 1885 4
30 % 1152 1899 7
Entity #2 | Chains: B
TRYPSIN INHIBITOR protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16839
95 % 2 4 15625 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 4 15299
70 % 2 4 14320
50 % 2 4 12644
40 % 6 30 1414
30 % 17 58 666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures