Sequence Similarity Clusters for the Entities in PDB 1AVV

Entity #1 | Chains: A
NEGATIVE FACTOR protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16242
95 % 5 5 6685 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 5 5 6671
70 % 9 12 2360
50 % 11 15 1905
40 % 11 15 1909
30 % 11 15 1832

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures