Sequence Similarity Clusters for the Entities in PDB 1AVO

Entity #1 | Chains: A,C,E,G,I,K,M
11S REGULATOR protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10640
95 % 1 1 10633 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 10498
70 % 1 1 9945
50 % 1 1 9007
40 % 1 1 8252
30 % 1 1 7262
Entity #2 | Chains: B,D,F,H,J,L,N
11S REGULATOR protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10429
95 % 1 1 10445 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 10309
70 % 1 1 9776
50 % 1 1 8864
40 % 1 1 8125
30 % 1 1 7157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.