Sequence Similarity Clusters for the Entities in PDB 1AVO

Entity #1 | Chains: A,C,E,G,I,K,M
11S REGULATOR protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10946
95 % 1 1 10935 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 10790
70 % 1 1 10239
50 % 1 1 9266
40 % 1 1 8483
30 % 1 1 7468
Entity #2 | Chains: B,D,F,H,J,L,N
11S REGULATOR protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10730
95 % 1 1 10744 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 10597
70 % 1 1 10069
50 % 1 1 9122
40 % 1 1 8351
30 % 1 1 7358

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures