Sequence Similarity Clusters for the Entities in PDB 1AVO

Entity #1 | Chains: A,C,E,G,I,K,M
11S REGULATOR protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 11417
95 % 1 1 11030 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 10874
70 % 1 1 10277
50 % 1 1 8924
40 % 1 1 8090
30 % 1 1 7002
Entity #2 | Chains: B,D,F,H,J,L,N
11S REGULATOR protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10961
95 % 1 1 10614 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 10473
70 % 1 1 9900
50 % 1 1 8925
40 % 1 1 8091
30 % 1 1 7003

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures