Sequence Similarity Clusters for the Entities in PDB 1AVO

Entity #1 | Chains: A,C,E,G,I,K,M
11S REGULATOR protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10799
95 % 1 1 10804 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 10670
70 % 1 1 10136
50 % 1 1 9165
40 % 1 1 8393
30 % 1 1 7390
Entity #2 | Chains: B,D,F,H,J,L,N
11S REGULATOR protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10585
95 % 1 1 10614 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 10477
70 % 1 1 9966
50 % 1 1 9020
40 % 1 1 8260
30 % 1 1 7280

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.