Sequence Similarity Clusters for the Entities in PDB 1AVG

Entity #1 | Chains: L
THROMBIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29371
95 % 1 2 24345 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 2 23557
70 % 19 25 1426
50 % 29 42 840
40 % 29 42 870
30 % 29 42 857
Entity #2 | Chains: H
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 22 1157
95 % 12 22 1571 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 12 22 1597
70 % 345 405 43
50 % 345 405 78
40 % 1469 1682 4
30 % 1586 1831 6
Entity #3 | Chains: I
TRIABIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64103
95 % 1 1 44180
90 % 1 1 41955
70 % 1 1 36970
50 % 1 1 31538
40 % 1 1 27851
30 % 1 1 23617

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.