Sequence Similarity Clusters for the Entities in PDB 1AVG

Entity #1 | Chains: L
THROMBIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29724
95 % 1 2 25939 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 2 25033
70 % 19 25 1513
50 % 29 42 886
40 % 29 42 911
30 % 29 42 899
Entity #2 | Chains: H
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 22 1429
95 % 12 22 1686 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 12 22 1725
70 % 347 409 47
50 % 347 409 85
40 % 1621 1873 4
30 % 1630 1887 7
Entity #3 | Chains: I
TRIABIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66867
95 % 1 1 54111
90 % 1 1 51295
70 % 1 1 44853
50 % 1 1 38027
40 % 1 1 33260
30 % 1 1 27798

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures