Sequence Similarity Clusters for the Entities in PDB 1AVG

Entity #1 | Chains: L
THROMBIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28351
95 % 1 2 23497
90 % 1 2 22752
70 % 19 25 1391
50 % 29 42 804
40 % 29 42 835
30 % 29 42 823
Entity #2 | Chains: H
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 22 1098
95 % 12 22 1508
90 % 12 22 1532
70 % 339 399 44
50 % 339 399 77
40 % 1409 1618 4
30 % 1523 1760 6
Entity #3 | Chains: I
TRIABIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62084
95 % 1 1 42759
90 % 1 1 40665
70 % 1 1 35891
50 % 1 1 30677
40 % 1 1 27100
30 % 1 1 22981

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.