Sequence Similarity Clusters for the Entities in PDB 1AVF

Entity #1 | Chains: P,Q
GASTRICSIN protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47721
95 % 1 1 35719 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34155
70 % 1 1 30482
50 % 1 1 26146
40 % 1 1 23138
30 % 1 1 19691
Entity #2 | Chains: A,J
GASTRICSIN protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25250
95 % 2 2 21241 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 2 2 20658
70 % 2 2 19051
50 % 20 22 2380
40 % 69 110 251
30 % 642 707 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.