Sequence Similarity Clusters for the Entities in PDB 1AVF

Entity #1 | Chains: P,Q
GASTRICSIN protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49401
95 % 1 1 36966 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35310
70 % 1 1 31431
50 % 1 1 26911
40 % 1 1 23808
30 % 1 1 20280
Entity #2 | Chains: A,J
GASTRICSIN protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26251
95 % 2 2 22089 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 2 2 21466
70 % 2 2 19692
50 % 20 22 2489
40 % 71 116 242
30 % 648 717 29

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.