Sequence Similarity Clusters for the Entities in PDB 1AVF

Entity #1 | Chains: P,Q
GASTRICSIN protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51026
95 % 1 1 38133 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 36375
70 % 1 1 32331
50 % 1 1 27641
40 % 1 1 24451
30 % 1 1 20814
Entity #2 | Chains: A,J
GASTRICSIN protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27230
95 % 2 2 22866 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 2 2 22192
70 % 2 2 20357
50 % 20 22 2594
40 % 78 127 226
30 % 662 737 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures