Sequence Similarity Clusters for the Entities in PDB 1AVF

Entity #1 | Chains: P,Q
GASTRICSIN protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30603
95 % 1 1 26634 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 25684
70 % 1 1 23244
50 % 1 1 19952
40 % 1 1 17611
30 % 1 1 14761
Entity #2 | Chains: A,J
GASTRICSIN protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26930
95 % 2 2 23688 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 2 2 22918
70 % 2 2 20873
50 % 20 22 2724
40 % 79 129 236
30 % 981 1116 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures