Sequence Similarity Clusters for the Entities in PDB 1AVA

Entity #1 | Chains: A,B
BARLEY ALPHA-AMYLASE 2(CV MENUET) protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 17956
95 % 1 3 16281 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 3 15970
70 % 7 13 3267
50 % 7 13 3189
40 % 7 13 3107
30 % 7 13 2908
Entity #2 | Chains: C,D
BARLEY ALPHA-AMYLASE/SUBTILISIN INHIBITOR protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21980
95 % 2 3 14540 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.7
PDBFlex
90 % 2 3 14268
70 % 2 3 13387
50 % 2 3 11908
40 % 2 3 10790
30 % 16 56 676

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.