Sequence Similarity Clusters for the Entities in PDB 1AVA

Entity #1 | Chains: A,B
BARLEY ALPHA-AMYLASE 2(CV MENUET) protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18374
95 % 1 3 16604 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 3 16289
70 % 7 13 3348
50 % 7 13 3262
40 % 7 13 3176
30 % 7 13 2968
Entity #2 | Chains: C,D
BARLEY ALPHA-AMYLASE/SUBTILISIN INHIBITOR protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22479
95 % 2 3 14811 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.7
PDBFlex
90 % 2 3 14540
70 % 2 3 13638
50 % 2 3 12122
40 % 2 3 10983
30 % 16 56 688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures